(Updated: Feb 16th, 2021)

DataViz

• From Data to Viz.
  • Shows the most correct way to DataViz
  • Has examples in R and d3. <3
• Vega and d3

Data Science & Stats

• Cool book on DS
  • Not deep, and much more on the application side, instead on the theory.
• Stats for Biologists
  • Quite useful for basic stats
• Basic DS
  • Basic tools for DS.
• Basic Stats
• Statistical Inference via Data Science
  • A pretty cool and decent book on Inference and DS

ML / Stats / Modeling

• Survival Analysis - I
• Survival Analysis - II
• GLM
  • A very very gentle intro to GLMs
• GLM
  • From Prof. Gilberto de Paula.
• GLM: The paper from Nelder
• GAMs
  • The best tutorial on GAMs <3
• GAMLSS
  • The package webpage. With tons of examples.
• Intro to Deep Learning - Video
• Deep Learning - Book
• ML with graphs
• Graph Representation Learning
• GNN
• Tutorials for G(C)NNs
• TensorFlow tutorial

Network Science

• Awesome Network
  • Massive repo on many tools for NetSci.
• Network Analysis
• NetVis
• visNetwork
  • Interactive Networks (useful for shiny)
• NetMed

Bioinformatics

NGS

• A Gentle Intro to NGS
• Another intro for NGS
• And… another
• RNAseq Workflow
• Diff Expression
  • A Tutorial for PEB2020
• Michael Love Tutorials
  • Yes, his tutorials are always great.

Phylogeny

• How to create trees
• MUSCLE webpage
  • Tool for creating the aligment & trees
• Tutorial from EVOLUTION AND GENOMICS
• Plot Trees

R

Tidy*

• Model with Tidy
  • All tools for DS
• Learn Tidyverse
• R4DS

RMD

• Improve the RMD skills
• Bookdown

Shiny

• Mastering Shiny